Basic Information
Locus ID:
gene_4817
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Short Name:
UBP2
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 38311434 | 38319701 | - | gene_4817 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 109,449.90 Da | 51.43 | 72.36 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 244 | 997 | 2.6E-47 | IPR001394 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 88 | 177 | 8.7E-15 | IPR001607 |
| SUPERFAMILY | SSF57850 | RING/U-box | 64 | 178 | 7.42E-15 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 243 | 999 | 1.32E-86 | IPR038765 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 59 | 196 | 1.0E-21 | IPR013083 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 241 | 440 | 2.2E-42 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 787 | 1002 | 4.0E-42 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 650 | 750 | 2.0E-6 | - |
| SMART | SM00290 | Zf_UBP_1 | 114 | 167 | 1.2E-11 | IPR001607 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 110 | 179 | 14.635475 | IPR001607 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 244 | 1000 | 44.881271 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 245 | 260 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 927 | 944 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 428 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 455 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 455 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 558 | 573 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 555 | 588 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 841 | 862 | - | - |
| Coils | Coil | Coil | 838 | 858 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04860.1 | ubiquitin-specific protease 2. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_021860006.1 | ubiquitin carboxyl-terminal hydrolase 2 [Spinacia oleracea] | 0 |
| Q8W4N3 | Ubiquitin carboxyl-terminal hydrolase 2 OS=Arabidopsis thaliana OX=3702 GN=UBP2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9QFS1 | ubiquitinyl hydrolase 1 OS=Spinacia oleracea OX=3562 GN=SOVF_184260 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12838 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4817 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022542 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g033400 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59483, Sbi_jg63169 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23724 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020669 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02854, Sgl07972 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000031312, gene:ENSEOMG00000046197 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0025590, CQ.Regalona.r1.3BG0026510 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30241350 |
| Apiaceae | Apium graveolens | 1 | Ag8G02163 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G008460, COCNU_15G004470 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103709381, gene-LOC103710842 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.522.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G28681 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G04860.1, AT2G32780.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006716m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g03710.v2.2, Sp4g15130.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g001980.2N, BniB03g001100.2N, BniB06g021950.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0730 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0777 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g01130 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0279s00010.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g21650 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5388 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.560 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002334 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G15805, Lb3G20307 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3912, BH02.3934, BH07.4243 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0540750, gene-QOZ80_6BG0493990 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0493830.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_006440 |
| Poaceae | Oryza coarctata | 2 | Oco17G008770, Oco18G008850 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g32740.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G232700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0701464, Pt_Chr0701477 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr0G001060, Chr10G015050, Chr11G007240, Chr14G016660 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G446800, Tel5E01G452100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG042490, gene_TRIDC5BG046410 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G284200.1, TraesCS5B02G282900.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb102350_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-10374, nbis-gene-19414, nbis-gene-56605 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30595, Zma_g32843 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.43, evm.TU.LG25.663 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g04070 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.1380, evm.TU.Scaffold_6_RagTag.989 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1703 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4074 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2625 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.628, evm.TU.utg000019l.408 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001620, Maker00008320 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12248, nbisL1-mrna-22877 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18122, nbisL1-mrna-4382 |
| Salicaceae | Populus euphratica | 4 | populus_peu01372, populus_peu01373, populus_peu24244 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132608834, gene-LOC132640255 |
| Solanaceae | Solanum chilense | 2 | SOLCI003739600, SOLCI004419400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107018776, gene-LOC107031600 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5364 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0156 |
| Zosteraceae | Zostera marina | 1 | Zosma04g01530.v3.1 |