Basic Information
Locus ID:
gene_4662
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Galactinol--sucrose galactosyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 35437299 | 35447409 | - | gene_4662 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 112,898.99 Da | 37.00 | 85.23 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 961 | 1011 | 1.7624E-15 | - |
| Pfam | PF05691 | Raffinose synthase or seed imbibition protein Sip1 | 7 | 761 | 0.0 | IPR008811 |
| Pfam | PF13639 | Ring finger domain | 961 | 1011 | 2.9E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 961 | 1016 | 1.16E-17 | - |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 197 | 526 | 1.2E-58 | IPR017853 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 929 | 1015 | 1.6E-15 | IPR013083 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 200 | 519 | 5.9E-12 | IPR013785 |
| SMART | SM00184 | ring_2 | 962 | 1010 | 3.2E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 962 | 1011 | 12.651561 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G57520.1 | seed imbibition 2. | 0 |
| RefSeq | XP_021724115.1 | probable galactinol--sucrose galactosyltransferase 2 [Chenopodium quinoa] | 0 |
| Q94A08 | Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=RFS2 PE=2 SV=2 | 0 | |
| TrEMBL | B5UAS6 | galactinol--sucrose galactosyltransferase OS=Tetragonia tetragonioides OX=45318 GN=TtAGA1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology