Basic Information
Locus ID:
gene_4617
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 34699066 | 34709370 | - | gene_4617 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 51,419.94 Da | 29.98 | 95.63 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 75 | 339 | 1.8E-82 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 97 | 336 | 1.26E-37 | IPR027417 |
| Gene3D | G3DSA:3.30.250.10 | - | 406 | 462 | 2.8E-6 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 103 | 405 | 3.5E-86 | IPR027417 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 103 | 262 | 28.512711 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 277 | 344 | 18.33946 | IPR020587 |
| PRINTS | PR00142 | RecA protein signature | 281 | 309 | 3.0E-55 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 195 | 224 | 3.0E-55 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 315 | 344 | 3.0E-55 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 161 | 190 | 3.0E-55 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 233 | 262 | 3.0E-55 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 368 | 385 | 3.0E-55 | IPR013765 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10140.1 | RECA homolog 3. | 0 |
| RefSeq | XP_021858500.1 | DNA repair protein recA homolog 2, mitochondrial [Spinacia oleracea] | 0 |
| Q8RY99 | DNA repair protein recA homolog 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g10140 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RW12 | DNA repair protein recA homolog 2, mitochondrial OS=Spinacia oleracea OX=3562 GN=SOVF_021920 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology