Basic Information
Locus ID:
gene_4606
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Regulatory protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 34427557 | 34431029 | - | gene_4606 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 52,932.44 Da | 48.13 | 88.35 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18310 | BTB_POZ_NPR_plant | 8 | 162 | 4.30611E-54 | - |
| Pfam | PF00651 | BTB/POZ domain | 16 | 110 | 8.5E-14 | IPR000210 |
| Pfam | PF11900 | Domain of unknown function (DUF3420) | 197 | 261 | 1.6E-10 | IPR024228 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 267 | 349 | 6.7E-12 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 278 | 362 | 1.14E-18 | IPR036770 |
| SUPERFAMILY | SSF54695 | POZ domain | 8 | 160 | 4.87E-19 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 4 | 195 | 6.8E-25 | IPR011333 |
| Gene3D | G3DSA:1.25.40.20 | - | 253 | 367 | 3.1E-20 | IPR036770 |
| SMART | SM00225 | BTB_4 | 25 | 162 | 6.1E-21 | IPR000210 |
| SMART | SM00248 | ANK_2a | 284 | 314 | 0.002 | IPR002110 |
| SMART | SM00248 | ANK_2a | 319 | 348 | 2.9E-5 | IPR002110 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 25 | 109 | 17.293198 | IPR000210 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 319 | 349 | 10.603827 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 319 | 351 | 11.5676 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G41370.1 | Ankyrin repeat family protein / BTB/POZ domain-containing protein. Encodes BOP2, a cytoplasmic and nuclear-localized NPR1 like protein with BTB/POZ domain and ankyrin repeats. Interacts with BOP1 and appears to be genetically redundant with BOP1.bop1/bop2 double mutants have longer leaves, often with leaflets on the petiole, asymmetric flowers with extra organs and no nectaries. Also defective in floral organ abscission. BOP1/2 promotes floral meristem fate and determinacy in a pathway targetting APETALA1 and AGAMOUS-LIKE24. PUCHI, BOP1 and BOP2 are redundantly required for expression of LFY and AP1. | 0 |
| RefSeq | XP_010672970.2 | BTB/POZ domain and ankyrin repeat-containing protein COCH [Beta vulgaris subsp. vulgaris] | 0 |
| G3LSH3 | BTB/POZ domain and ankyrin repeat-containing protein NBCL OS=Lotus japonicus OX=34305 GN=NBCL PE=1 SV=1 | 0 | |
| TrEMBL | A0A1Q3B0S4 | BTB domain-containing protein/DUF3420 domain-containing protein/Ank_2 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_05087 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg15851, jg31345, jg33241, jg4277 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4606 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022083 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g062440 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14656, Sbi_jg55411 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25976 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00013025, GOSA_00018639 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl00041, Sgl69066 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013971, gene:ENSEOMG00000029252 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0022400, CQ.Regalona.r1.3BG0023090 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30188850 |
| Apiaceae | Apium graveolens | 3 | Ag10G02303, Ag2G01526, Ag3G02792 |
| Arecaceae | Cocos nucifera | 6 | COCNU_04G007000, COCNU_12G004620, COCNU_12G004640 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103705107, gene-LOC103713409, gene-LOC103714656 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_07.1598.V1.1, AsparagusV1_08.3009.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G12519, Ftri12G23143 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G41370.1, AT3G57130.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10005948m.g.v1.0, Thhalv10016568m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g23660.v2.2, Sp5g05440.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g004140.2N, BniB06g000610.2N, BniB06g056050.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0967 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G1091, Cgl04G1092 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g11530, gene.Cymno05g12520 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g30160 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8425 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2531 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006809 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16102 |
| Poaceae | Echinochloa crus-galli | 10 | AH02.4498, AH03.620, AH04.238, AH05.156, BH02.4549, BH04.234 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_1AG0046390, gene-QOZ80_1BG0096380 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0319900.1, HORVU.MOREX.r3.5HG0460940.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_003356, gene-QYE76_016529, gene-QYE76_058017 |
| Poaceae | Oryza coarctata | 6 | Oco01G029880, Oco02G031050, Oco21G000750, Oco22G001600 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g72020.1, LOC_Os11g04600.1, LOC_Os12g04410.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G400800, gene-BS78_05G039000 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0207378, Pt_Chr0605935, Pt_Chr0702999, Pt_Chr0703078 |
| Poaceae | Sporobolus alterniflorus | 9 | Chr02G001120, Chr03G023550, Chr04G021810, Chr05G033550 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G792000, Tel3E01G784900, Tel5E01G238300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG068800, gene_TRIDC3BG078000 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G489000.1, TraesCS3B02G537400.1 ... |
| Poaceae | Zea mays | 6 | Zm00001eb093200_P001, Zm00001eb141160_P001 ... |
| Poaceae | Zoysia japonica | 6 | nbis-gene-10842, nbis-gene-25695, nbis-gene-28172 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g11931, Zma_g17544, Zma_g24706, Zma_g25483, Zma_g9373 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG07.416, evm.TU.LG13.1279, evm.TU.LG15.525 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g26750 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1651 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8981 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13577 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.73 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011871 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13237 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12344 |
| Salicaceae | Populus euphratica | 2 | populus_peu10875, populus_peu26235 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132607431, gene-LOC132607461, gene-LOC132615877 |
| Solanaceae | Solanum chilense | 2 | SOLCI002780200, SOLCI003729400 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107016182, gene-LOC107032228, gene-LOC107032447 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.14238_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1901 |
| Zosteraceae | Zostera marina | 2 | Zosma01g39310.v3.1, Zosma02g17520.v3.1 |