Basic Information
Locus ID:
gene_4590
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Nucleolar protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 34182835 | 34199945 | - | gene_4590 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.04 | 81,100.29 Da | 48.44 | 75.69 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08159 | NUC153 domain | 531 | 557 | 1.1E-11 | IPR012580 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 228 | 316 | 1.7E-4 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 79 | 369 | 3.05E-29 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 41 | 375 | 3.5E-22 | IPR015943 |
| SMART | SM00320 | WD40_4 | 294 | 337 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 203 | 242 | 27.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 251 | 291 | 0.43 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 576 | 601 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 667 | 727 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 667 | 685 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56990.1 | embryo sac development arrest 7. | 0 |
| RefSeq | XP_010673006.2 | nucleolar protein 10 [Beta vulgaris subsp. vulgaris] | 0 |
| Q7T0Q5 | Nucleolar protein 10 OS=Xenopus laevis OX=8355 GN=nol10 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QHU5 | NUC153 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_177380 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15844 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4590 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027277 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g062780 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg58853, Sbi_jg63755 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23134 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009235 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl02252, Sgl07403, Sgl82719 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000001886, gene:ENSEOMG00000002747 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6BG0025040, CQ.Regalona.r1.9AG0011260 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30166350, pistato.v30275280 |
| Apiaceae | Apium graveolens | 1 | Ag3G02797 |
| Arecaceae | Cocos nucifera | 1 | scaffold019715G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715066 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.395.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri4G16881, Ftri8G23504 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G56990.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005807m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g05590.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB05g003530.2N, BniB06g056110.2N, BniB08g071720.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0917 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1036 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g10090 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0533s00004.v1.0, Dusal.0533s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g01800 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8746 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2609 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000007 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16083 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.481, BH06.164, CH06.152 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0643180.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_027555 |
| Poaceae | Oryza coarctata | 2 | Oco10G003550, Oco12G001200 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g03780.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_10G021000, gene-BS78_K328500, gene-BS78_K328600 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0303692, Pt_Chr0401917, Pt_Chr0503301, Pt_Chr0506188 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G008340, Chr08G007450, Chr21G000080, Chr24G003830 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G093300, Tel7E01G129100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4AG063620, gene_TRIDC4BG019790 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G429300.1, TraesCS7A02G060100.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb034510_P001, Zm00001eb373800_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-51172 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31269 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1307, evm.TU.LG21.1018 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g15930 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1634 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17552 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13562 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.88 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011607 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13221 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12327 |
| Salicaceae | Populus euphratica | 2 | populus_peu10821, populus_peu26261 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132606965, gene-LOC132608238 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031938 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.21177_chr08_-, gene_10441 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1954 |
| Zosteraceae | Zostera marina | 1 | Zosma02g19690.v3.1 |