Basic Information
Locus ID:
gene_4552
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 33345566 | 33348612 | - | gene_4552 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 78,390.43 Da | 50.52 | 66.05 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14704 | bZIP_HY5-like | 245 | 296 | 6.78298E-23 | - |
| Pfam | PF00170 | bZIP transcription factor | 243 | 302 | 9.7E-13 | IPR004827 |
| SUPERFAMILY | SSF57959 | Leucine zipper domain | 244 | 302 | 6.25E-13 | - |
| Gene3D | G3DSA:1.20.5.170 | - | 243 | 304 | 6.3E-12 | - |
| SMART | SM00338 | brlzneu | 240 | 304 | 1.6E-18 | IPR004827 |
| ProSiteProfiles | PS50217 | Basic-leucine zipper (bZIP) domain profile. | 242 | 302 | 10.679649 | IPR004827 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 180 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 371 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 236 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 498 | 514 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 498 | 521 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 219 | - | - |
| Coils | Coil | Coil | 253 | 287 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40950.1 | Basic-leucine zipper (bZIP) transcription factor family protein. bZIP17 appears to regulate transcription as part of a salt and osmotic stress response. zip17 mutants show enhanced inhibition of primary root elongation in response to NaCl. Several salt-responsive genes, such as ATHB-7 show a reduced transcriptional response to a salt treatment in zip17 mutant seedlings. myc:bZIP17 undergoes proteolytic processing in salt-treated wild type seedlings, but not in s1p-3 (subtilase) mutants and there is also evidence for S1P-mediated cleavage of bZIP17 in vitro. In addition, an mGFP:bZIP17 protein moves from the ER to the nucleus following salt treatment. | 0 |
| RefSeq | XP_021745858.1 | bZIP transcription factor 17-like [Chenopodium quinoa] | 0 |
| O22208 | bZIP transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=BZIP17 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9QEM4 | BZIP domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_193430 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg15797, jg15798, jg31398, jg4195 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4552 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022217 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g063410 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg58912, Sbi_jg63700 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23195 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012959 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl02313, Sgl02314, Sgl07462, Sgl07463 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014260, gene:ENSEOMG00000030033 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0023330, CQ.Regalona.r1.3BG0024060 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30075000 |
| Apiaceae | Apium graveolens | 3 | Ag10G02222, Ag1G01699, Ag3G01467 |
| Arecaceae | Cocos nucifera | 2 | COCNU_16G000730, scaffold000854G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103720588, gene-LOC103721788, gene-LOC120107222 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.1731.V1.1, AsparagusV1_Unassigned.417.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G01785, Ftri12G18395 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G40950.1, AT3G10800.1, AT3G56660.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10005827m.g.v1.0, Thhalv10016317m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp3g09120.v2.2, Sp4g23270.v2.2, Sp5g05900.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB01g004460.2N, BniB01g054200.2N, BniB01g054210.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0861 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0977 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g14690 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g09710, gene.Thate06g04890 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.2655, evm.TU.LG09.424 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00000062, Pov_00017554 |
| Plumbaginaceae | Limonium bicolor | 6 | Lb1G01298, Lb1G07277, Lb1G07285, Lb1G07298, Lb2G09901 ... |
| Poaceae | Echinochloa crus-galli | 5 | AH03.3885, BH03.4172, BH05.2552, CH05.2648, CH07.333 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0373250, gene-QOZ80_5BG0420530 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0065020.1, HORVU.MOREX.r3.2HG0119190.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_039241 |
| Poaceae | Oryza coarctata | 3 | Oco09G009570, Oco13G014160, Oco14G014990 |
| Poaceae | Oryza sativa | 2 | LOC_Os05g34050.1, LOC_Os07g44950.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G375700, gene-BS78_09G143800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0304894, Pt_Chr0304922 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G020560, Chr12G017420, Chr18G009320, Chr19G001240 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G426000, Tel2E01G289600 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1BG043770, gene_TRIDC2AG017790 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G258100.1, TraesCS1B02G268500.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb110370_P002, Zm00001eb288060_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-13926, nbis-gene-231, nbis-gene-33126 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g27208, Zma_g5678, Zma_g6964 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1365, evm.TU.LG21.977 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g30480, gene.Posoc07g12630 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1597, evm.TU.Scaffold_8_RagTag.206 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-10122, nbisL1-mrna-19137 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16417, nbisL1-mrna-19285 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-13526, nbisL1-mrna-13527, nbisL1-mrna-17833 ... |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.117, evm.TU.utg000018l.862 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003266, Maker00011700 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13187, nbisL1-mrna-3144 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11395, nbisL1-mrna-12283 |
| Salicaceae | Populus euphratica | 2 | populus_peu10792, populus_peu26311 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603922, gene-LOC132607579 |
| Solanaceae | Solanum chilense | 3 | SOLCI001577800, SOLCI003882000, SOLCI004197200 |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107002225, gene-LOC107013207, gene-LOC107016941 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12414 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G2010 |
| Zosteraceae | Zostera marina | 1 | Zosma01g27550.v3.1 |