Basic Information
Locus ID:
gene_4532
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 101417177 | 101422208 | + | gene_4532 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 53,167.35 Da | 62.90 | 75.77 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 235 | 283 | 3.09E-16 | - |
| Pfam | PF12906 | RING-variant domain | 235 | 282 | 3.9E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 231 | 286 | 1.45E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 221 | 290 | 4.2E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 234 | 283 | 4.0E-20 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 227 | 289 | 20.253637 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 235 | 283 | 8.71251 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 154 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 180 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 443 | 480 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 216 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010037957.2 | uncharacterized protein LOC104426553 [Eucalyptus grandis] | 0 |
| TrEMBL | A0A5B7BCR3 | RING-CH-type domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_035449 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology