Basic Information
Locus ID:
gene_4510
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 99230907 | 99251678 | + | gene_4510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.22 | 93,289.07 Da | 40.34 | 82.08 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00628 | PHD-finger | 491 | 532 | 1.8E-7 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 250 | 305 | 6.3E-11 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 426 | 474 | 1.4E-14 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 484 | 533 | 5.96E-14 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 719 | 822 | 3.07E-7 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 573 | 633 | 2.02E-7 | IPR011011 |
| Gene3D | G3DSA:3.40.630.30 | - | 723 | 832 | 1.6E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 575 | 638 | 1.9E-10 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 477 | 554 | 3.8E-17 | IPR013083 |
| SMART | SM00249 | PHD_3 | 582 | 635 | 0.062 | IPR001965 |
| SMART | SM00249 | PHD_3 | 490 | 531 | 5.0E-9 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 488 | 533 | 10.1397 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 491 | 530 | - | IPR019786 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36720.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_034694692.1 | uncharacterized protein LOC117921044 [Vitis riparia] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4S4DBE4 | PHD-type domain-containing protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_021120 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology