Basic Information
Locus ID:
gene_4371
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Mitogen-activated protein kinase-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 88742085 | 88753979 | + | gene_4371 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 133,568.09 Da | 43.64 | 80.52 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 109 | 146 | 1.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 156 | 189 | 0.15 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 408 | 719 | 3.17E-48 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 19 | 421 | 1.88E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 31 | 217 | 4.0E-36 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 593 | 778 | 1.0E-21 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 442 | 592 | 4.0E-21 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 224 | 441 | 1.1E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 490 | 542 | 0.016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 152 | 189 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 449 | 487 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 680 | 719 | 6.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 105 | 146 | 3.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 59 | 102 | 52.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 636 | 677 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 590 | 633 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 365 | 421 | 28.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 546 | 585 | 2.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 323 | 359 | 61.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 687 | 720 | 9.572741 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09080.4 | - | 0 |
| RefSeq | XP_010654198.1 | PREDICTED: mitogen-activated protein kinase-binding protein 1 isoform X1 [Vitis vinifera] | 0 |
| Q8HXL3 | WD repeat-containing protein 62 OS=Sus scrofa OX=9823 GN=WDR62 PE=3 SV=1 | 0 | |
| TrEMBL | A0A834YZC5 | WD_REPEATS_REGION domain-containing protein OS=Tetracentron sinense OX=13715 GN=HHK36_016253 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14799 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30285450 |
| Apiaceae | Apium graveolens | 1 | Ag5G02363 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G25194 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G09080.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022253m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g07530.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g058390.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1051 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G1076, Cgl08G1077 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1010s00004.v1.0 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1069 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006461 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G09988 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1767 |
| Salicaceae | Populus euphratica | 1 | populus_peu11401 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630690 |
| Solanaceae | Solanum chilense | 1 | SOLCI000172200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029641 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4371 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1795 |