Basic Information
Locus ID:
gene_4368
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 28558192 | 28560059 | - | gene_4368 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 38,836.47 Da | 70.55 | 75.32 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 138 | 181 | 1.47937E-21 | - |
| Pfam | PF13639 | Ring finger domain | 138 | 181 | 7.2E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 138 | 185 | 1.51E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 97 | 189 | 5.3E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 139 | 180 | 8.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 139 | 181 | 12.563043 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 357 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 297 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 246 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16720.1 | TOXICOS EN LEVADURA 2. RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations. | 0 |
| RefSeq | XP_010693585.2 | RING-H2 finger protein ATL2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8L9T5 | RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LLW1 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology