Basic Information
Locus ID:
gene_4286
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 24898966 | 24902821 | - | gene_4286 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.01 | 33,722.67 Da | 44.76 | 89.90 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 14 | 48 | 2.9E-6 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 60 | 157 | 1.71E-5 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 12 | 57 | 9.42E-8 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 9 | 48 | 4.7E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 55 | 198 | 5.4E-10 | IPR032675 |
| SMART | SM00256 | fbox_2 | 10 | 50 | 0.0064 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 4 | 51 | 10.000863 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26000.1 | Ribonuclease inhibitor. | 0 |
| RefSeq | XP_021727260.1 | F-box protein SKIP28-like [Chenopodium quinoa] | 0 |
| Q9LU91 | F-box protein SKIP14 OS=Arabidopsis thaliana OX=3702 GN=SKIP14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LJL7 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology