Basic Information
Locus ID:
gene_4243
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 75187863 | 75213404 | + | gene_4243 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.88 | 65,749.16 Da | 55.46 | 65.19 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 129 | 179 | 4.05337E-12 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 198 | 260 | 4.0E-12 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 284 | 324 | 7.4E-8 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 279 | 327 | 9.72E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 198 | 267 | 1.77E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 124 | 207 | 8.83E-18 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 256 | 510 | 4.3E-82 | - |
| Gene3D | G3DSA:2.30.30.380 | - | 535 | 567 | 5.2E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 124 | 212 | 7.8E-17 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 198 | 260 | 3.6E-18 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 264 | 334 | 0.13 | IPR002867 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 535 | 567 | 8.320863 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 125 | 338 | 48.792046 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 542 | 561 | - | IPR001876 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 309 | 318 | - | IPR017907 |
| Coils | Coil | Coil | 381 | 401 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31510.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_010671821.1 | probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84RR0 | Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana OX=3702 GN=ARI7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9A7G8 | RBR-type E3 ubiquitin transferase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology