halophFGD

Basic Information

Locus ID: gene_4232

Species & Taxonomic ID: Reaumuria soongarica & 194564

Genome Assembly: GCA_040143545.1

Description: Belongs to the ubiquitin-conjugating enzyme family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr04	73933044	73934770	+	gene_4232

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.25	43,171.76 Da	36.69	76.88	-0.46

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00195	UBCc	73	201	2.2572E-27	IPR000608
Pfam	PF00179	Ubiquitin-conjugating enzyme	76	221	1.1E-25	IPR000608
SUPERFAMILY	SSF54495	UBC-like	59	238	1.27E-38	IPR016135
Gene3D	G3DSA:3.10.110.10	Ubiquitin Conjugating Enzyme	19	307	9.2E-73	IPR016135
SMART	SM00212	ubc_7	74	231	4.0E-29	-
ProSiteProfiles	PS50127	Ubiquitin-conjugating (UBC) core domain profile.	71	231	35.85125	IPR000608
MobiDBLite	mobidb-lite	consensus disorder prediction	1	26	-	-

KEGG Pathway

KO Term:

K10581 (ubiquitin-conjugating enzyme E2 O [EC:2.3.2.24])

Pathway:

ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G33770.1	phosphate 2. Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response.
RefSeq	XP_015883171.2	putative ubiquitin-conjugating enzyme E2 38 [Ziziphus jujuba var. spinosa]
Swiss-Prot	Q8VY10	Probable ubiquitin-conjugating enzyme E2 24 OS=Arabidopsis thaliana OX=3702 GN=UBC24 PE=1 SV=1
TrEMBL	A0A6P3ZTZ8	putative ubiquitin-conjugating enzyme E2 38 OS=Ziziphus jujuba OX=326968 GN=LOC107418976 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg19470, jg24454, jg26130, jg5630, jg5633
Aizoaceae	Mesembryanthemum crystallinum	5	gene_15657, gene_21052, gene_2930, gene_2931, gene_7448
Amaranthaceae	Atriplex hortensis	3	Ah008153, Ah012098, Ah019245
Amaranthaceae	Beta vulgaris	4	BVRB_3g054350, BVRB_4g086990, BVRB_4g087020, BVRB_9g204860
Amaranthaceae	Salicornia bigelovii	9	Sbi_jg11787, Sbi_jg11788, Sbi_jg18663, Sbi_jg37101 ... Sbi_jg38066, Sbi_jg38067, Sbi_jg46617, Sbi_jg47225, Sbi_jg6198
Amaranthaceae	Salicornia europaea	3	Seu_jg15645, Seu_jg21020, Seu_jg4918
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00006246, GOSA_00006871, GOSA_00006873, GOSA_00016807
Amaranthaceae	Suaeda glauca	9	Sgl00686, Sgl00803, Sgl05702, Sgl23162, Sgl23163, Sgl28256 ... Sgl28257, Sgl80041, Sgl82474
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000011786, gene:ENSEOMG00000015160 ... gene:ENSEOMG00000028661, gene:ENSEOMG00000030227, gene:ENSEOMG00000037779, gene:ENSEOMG00000041150, gene:ENSEOMG00000042145, gene:ENSEOMG00000049431
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.2AG0002840, CQ.Regalona.r1.3AG0000360 ... CQ.Regalona.r1.3BG0000290, CQ.Regalona.r1.4AG0019830, CQ.Regalona.r1.4BG0020120, CQ.Regalona.r1.9AG0007290, CQ.Regalona.r1.9BG0014620
Anacardiaceae	Pistacia vera	2	pistato.v30019850, pistato.v30161090
Apiaceae	Apium graveolens	7	Ag11G03142, Ag11G03391, Ag2G00249, Ag3G00292, Ag4G02056 ... Ag7G01733, Ag8G01792
Arecaceae	Cocos nucifera	3	COCNU_02G003940, COCNU_03G011660, scaffold020239G000020
Arecaceae	Phoenix dactylifera	2	gene-LOC103702531, gene-LOC103718674
Asparagaceae	Asparagus officinalis	5	AsparagusV1_01.1346.V1.1, AsparagusV1_01.1347.V1.1 ... AsparagusV1_01.467.V1.1, AsparagusV1_06.1714.V1.1, AsparagusV1_09.807.V1.1
Asteraceae	Flaveria trinervia	5	Ftri14G10070, Ftri4G25074, Ftri5G10446, Ftri7G03049 ... Ftri8G31022
Brassicaceae	Arabidopsis thaliana	3	AT1G53023.1, AT1G53025.1, AT3G15355.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10011411m.g.v1.0, Thhalv10020387m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g39580.v2.2, Sp3g13590.v2.2
Brassicaceae	Brassica nigra	13	BniB01g023290.2N, BniB01g026020.2N, BniB01g049620.2N ... BniB03g058660.2N, BniB03g061810.2N, BniB04g056370.2N, BniB06g023020.2N, BniB06g027800.2N, BniB06g027820.2N, BniB06g027860.2N, BniB07g003160.2N, BniB07g028220.2N, BniB07g054320.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq01G1031, Ceq02G2623, Ceq09G1030
Casuarinaceae	Casuarina glauca	4	Cgl01G1143, Cgl01G1202, Cgl02G2716, Cgl09G1119
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno02g16680
Dunaliellaceae	Dunaliella salina	3	Dusal.0029s00009.v1.0, Dusal.0130s00023.v1.0 ... Dusal.0357s00006.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate07g17910, gene.Thate09g07670
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-9199, nbisL1-mrna-9384
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG04.1841, evm.TU.LG05.1610
Plantaginaceae	Plantago ovata	6	Pov_00004531, Pov_00012982, Pov_00026266, Pov_00026269 ... Pov_00026270, Pov_00038713
Plumbaginaceae	Limonium bicolor	5	Lb1G06674, Lb1G06675, Lb4G26106, Lb6G32269, Lb7G33177
Poaceae	Echinochloa crus-galli	13	AH02.2737, AH02.68, AH02.76, AH05.574, BH02.58, BH02.65 ... BH05.617, CH02.3722, CH02.68, CH05.3666, CH05.3735, CH05.4056, CH05.715
Poaceae	Eleusine coracana subsp. coracana	13	gene-QOZ80_1AG0000580, gene-QOZ80_1AG0000670 ... gene-QOZ80_1AG0028480, gene-QOZ80_1BG0049020, gene-QOZ80_1BG0049080, gene-QOZ80_1BG0078670, gene-QOZ80_5AG0363680, gene-QOZ80_5AG0400920, gene-QOZ80_5AG0401190, gene-QOZ80_5BG0411800, gene-QOZ80_5BG0449480, gene-QOZ80_5BG0449750, gene-QOZ80_5BG0452540
Poaceae	Hordeum vulgare	8	HORVU.MOREX.r3.1HG0031770.1, HORVU.MOREX.r3.1HG0086000.1 ... HORVU.MOREX.r3.1HG0091180.1, HORVU.MOREX.r3.3HG0223700.1, HORVU.MOREX.r3.3HG0249250.1, HORVU.MOREX.r3.3HG0249450.1, HORVU.MOREX.r3.3HG0249480.1, HORVU.MOREX.r3.3HG0279940.1
Poaceae	Lolium multiflorum	9	gene-QYE76_010470, gene-QYE76_014679, gene-QYE76_015748 ... gene-QYE76_047087, gene-QYE76_051592, gene-QYE76_051599, gene-QYE76_051603, gene-QYE76_051608, gene-QYE76_054554
Poaceae	Oryza coarctata	8	Oco01G005920, Oco01G006000, Oco02G006000, Oco02G006070 ... Oco09G005060, Oco09G016460, Oco10G004950, Oco10G016290
Poaceae	Oryza sativa	8	LOC_Os01g12950.2, LOC_Os01g13170.1, LOC_Os01g13280.1 ... LOC_Os01g48580.1, LOC_Os03g47580.1, LOC_Os05g14300.1, LOC_Os05g48380.1, LOC_Os09g12310.1
Poaceae	Paspalum vaginatum	6	gene-BS78_03G004500, gene-BS78_03G005200, gene-BS78_K190700 ... gene-BS78_03G230300, gene-BS78_09G111000, gene-BS78_09G231300
Poaceae	Puccinellia tenuiflora	8	Pt_Chr0204844, Pt_Chr0204851, Pt_Chr0300106, Pt_Chr0300128 ... Pt_Chr0501448, Pt_Chr0505734, Pt_Chr0505742, Pt_Chr0602341
Poaceae	Sporobolus alterniflorus	17	Chr01G010930, Chr02G012780, Chr03G000650, Chr05G020890 ... Chr06G020550, Chr08G004800, Chr12G025980, Chr14G017420, Chr14G017440, Chr14G017480, Chr18G004940, Chr19G007160, Chr21G016290, Chr21G016310, Chr21G016320, Chr22G001610, Chr22G012340
Poaceae	Thinopyrum elongatum	12	Tel1E01G234600, Tel1E01G634200, Tel2E01G122400 ... Tel2E01G971500, Tel3E01G052100, Tel3E01G280800, Tel3E01G281700, Tel3E01G281900, Tel3E01G446000, Tel4E01G487100, Tel4E01G487400, Tel5E01G424700
Poaceae	Triticum dicoccoides	12	gene_TRIDC1AG019850, gene_TRIDC1AG057040 ... gene_TRIDC1BG022550, gene_TRIDC1BG065600, gene_TRIDC3AG021240, gene_TRIDC3AG021380, gene_TRIDC3AG040110, gene_TRIDC3BG025480, gene_TRIDC3BG025600, gene_TRIDC3BG045320, gene_TRIDC5AG019620, gene_TRIDC5BG043720
Poaceae	Triticum aestivum	27	TraesCS1A02G129500.2, TraesCS1A02G388000.1 ... TraesCS1B02G146400.2, TraesCS1B02G415500.2, TraesCS1D02G125200.2, TraesCS1D02G396000.2, TraesCS2A02G441700.1, TraesCS3A02G030200.1.cds1, TraesCS3A02G156300.1, TraesCS3A02G157200.1, TraesCS3A02G157300.2, TraesCS3A02G269200.1, TraesCS3B02G029300.1.cds1, TraesCS3B02G183000.1, TraesCS3B02G183600.1, TraesCS3B02G183800.2, TraesCS3B02G303300.1, TraesCS3D02G164200.1, TraesCS3D02G164800.2, TraesCS3D02G164900.3, TraesCS3D02G269000.1, TraesCS4D02G289700.1.cds1, TraesCS5B02G264000.1, TraesCS5D02G272300.1, TraesCS5D02G272400.1, TraesCS7B02G110500.1.cds1, TraesCS7D02G206600.1
Poaceae	Zea mays	6	Zm00001eb119100_P001, Zm00001eb119150_P003 ... Zm00001eb295480_P003, Zm00001eb339310_P001, Zm00001eb343290_P002, Zm00001eb399020_P001
Poaceae	Zoysia japonica	6	nbis-gene-13706, nbis-gene-13707, nbis-gene-24259 ... nbis-gene-26081, nbis-gene-32728, nbis-gene-32732
Poaceae	Zoysia macrostachya	5	Zma_g10867, Zma_g27357, Zma_g7175, Zma_g7178, Zma_g9493
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.717, evm.TU.LG09.1888, evm.TU.LG18.447 ... evm.TU.LG26.591
Posidoniaceae	Posidonia oceanica	6	gene.Posoc08g10730, gene.Posoc08g10740, gene.Posoc09g03630 ... gene.Posoc09g05490, gene.Posoc09g05500, gene.Posoc09g05960
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_3_RagTag.661, evm.TU.Scaffold_3_RagTag.662 ... evm.TU.Scaffold_3_RagTag.663, evm.TU.Scaffold_5_RagTag.1358, evm.TU.Scaffold_9_RagTag.172
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-11868, nbisL1-mrna-1313, nbisL1-mrna-1314 ... nbisL1-mrna-1315, nbisL1-mrna-19278, nbisL1-mrna-21876
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-10198, nbisL1-mrna-1814, nbisL1-mrna-18447 ... nbisL1-mrna-18448
Rhizophoraceae	Ceriops zippeliana	6	nbisL1-mrna-11104, nbisL1-mrna-6346, nbisL1-mrna-6347 ... nbisL1-mrna-6348, nbisL1-mrna-7525, nbisL1-mrna-7526
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000019l.339, add.evm.TU.utg000019l.340 ... evm.TU.utg000003l.116, evm.TU.utg000006l.794, evm.TU.utg000019l.818
Rhizophoraceae	Kandelia obovata	4	Maker00012584, Maker00012812, Maker00013924, Maker00017534
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-10318, nbisL1-mrna-18836, nbisL1-mrna-22229 ... nbisL1-mrna-5282, nbisL1-mrna-6742
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-21699, nbisL1-mrna-4047, nbisL1-mrna-7143
Salicaceae	Populus euphratica	7	populus_peu00519, populus_peu06883, populus_peu16820 ... populus_peu17582, populus_peu20799, populus_peu37387, populus_peu37497
Solanaceae	Lycium barbarum	4	gene-LOC132604489, gene-LOC132616651, gene-LOC132628806 ... gene-LOC132636477
Solanaceae	Solanum chilense	3	SOLCI000578000, SOLCI002996700, SOLCI003482400
Solanaceae	Solanum pennellii	3	gene-LOC107005689, gene-LOC107024308, gene-LOC107032300
Tamaricaceae	Reaumuria soongarica	4	STRG.3272_chr01_-, gene_10553, gene_14341, gene_4232
Tamaricaceae	Tamarix chinensis	4	TC01G2621, TC02G1560, TC07G0229, TC07G1292
Zosteraceae	Zostera marina	2	Zosma01g23440.v3.1, Zosma04g08520.v3.1