Basic Information
Locus ID:
gene_4197
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 19928445 | 19936278 | - | gene_4197 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 68,246.02 Da | 37.27 | 101.20 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 240 | 282 | 6.16767E-28 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 446 | 484 | 6.8E-6 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 363 | 402 | 7.4E-10 | IPR000225 |
| Pfam | PF04564 | U-box domain | 236 | 306 | 9.9E-21 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 234 | 309 | 3.06E-30 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 333 | 609 | 5.04E-47 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 317 | 427 | 5.0E-21 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 428 | 511 | 1.1E-15 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 236 | 310 | 1.8E-30 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 512 | 616 | 2.5E-12 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 1 | 110 | 4.3E-7 | IPR036537 |
| SMART | SM00185 | arm_5 | 486 | 526 | 60.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 445 | 485 | 0.058 | IPR000225 |
| SMART | SM00185 | arm_5 | 363 | 403 | 1.2E-5 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 239 | 302 | 3.1E-35 | IPR003613 |
| SMART | SM00185 | arm_5 | 404 | 444 | 0.079 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 235 | 309 | 43.566837 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 374 | 416 | 13.7024 | IPR000225 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_021717676.1 | U-box domain-containing protein 14 [Chenopodium quinoa] | 0 |
| Q8VZ40 | U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QVY3 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_135140 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology