Basic Information
Locus ID:
gene_4140
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 53720034 | 53772924 | + | gene_4140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.38 | 48,716.46 Da | 43.09 | 85.55 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 49 | 132 | 8.1E-18 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 175 | 245 | 5.2E-12 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 256 | 2.33E-43 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 142 | 255 | 4.5E-19 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 7 | 141 | 1.5E-31 | IPR036770 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.092 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 141 | 3.3 | IPR002110 |
| SMART | SM00248 | ANK_2a | 219 | 251 | 1.7E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 176 | 205 | 4.0E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 2.8E-5 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 176 | 204 | 10.365044 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 219 | 245 | 10.71288 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 9.59106 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.469215 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 176 | 208 | 10.97998 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 219 | 245 | 10.68342 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.58583 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 9.569101 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 277 | 286 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 192 | 206 | 7.9E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 112 | 127 | 7.9E-5 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_002278915.1 | PREDICTED: E3 ubiquitin-protein ligase XBAT33 isoform X1 [Vitis vinifera] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | D7TMU6 | RING-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_16s0100g00690 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology