Basic Information
Locus ID:
gene_4042
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 11592054 | 11605172 | - | gene_4042 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 138,080.41 Da | 51.62 | 75.10 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 655 | 799 | 1.83521E-30 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1110 | 1153 | 6.59377E-17 | - |
| CDD | cd12108 | Hr-like | 308 | 436 | 1.71647E-14 | - |
| CDD | cd12108 | Hr-like | 47 | 173 | 1.63235E-32 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 49 | 175 | 1.1E-11 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 306 | 438 | 2.5E-7 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1158 | 1215 | 7.7E-24 | IPR039512 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 651 | 800 | 2.3E-9 | IPR012312 |
| Pfam | PF13639 | Ring finger domain | 1110 | 1152 | 1.5E-6 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 982 | 1057 | 1.5E-17 | IPR008913 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1110 | 1156 | 1.1E-7 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 973 | 1038 | 1.44E-15 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1048 | 1103 | 7.32E-15 | IPR037275 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 307 | 454 | 2.7E-19 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 43 | 193 | 1.5E-33 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1104 | 1155 | 7.4E-9 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 647 | 874 | 1.1E-27 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1182 | 1223 | 8.0E-17 | - |
| SMART | SM00184 | ring_2 | 1111 | 1152 | 1.1E-5 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 975 | 1044 | 25.166063 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1111 | 1153 | 11.176261 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1047 | 1110 | 29.388844 | IPR017921 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 553 | 567 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 538 | 582 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_010681649.2 | zinc finger protein BRUTUS isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8YHY9 | Zinc finger protein BRUTUS OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology