Basic Information
Locus ID:
gene_4001
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 10263774 | 10281853 | - | gene_4001 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.57 | 42,990.57 Da | 54.61 | 80.22 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14379 | UBA1_Rad23_plant | 175 | 223 | 2.3637E-29 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 4.87567E-31 | - |
| Pfam | PF09280 | XPC-binding domain | 285 | 340 | 1.8E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 368 | 401 | 2.7E-12 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 180 | 218 | 7.0E-15 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 7.3E-20 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 78 | 4.14E-23 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 178 | 232 | 2.98E-12 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 282 | 347 | 1.83E-21 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 349 | 408 | 6.81E-14 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 358 | 406 | 8.7E-23 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 175 | 223 | 5.7E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 4.5E-29 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 276 | 341 | 4.9E-27 | IPR036353 |
| SMART | SM00727 | CBM | 283 | 326 | 2.1E-6 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 7.0E-23 | IPR000626 |
| SMART | SM00165 | uba_6 | 366 | 403 | 2.3E-6 | IPR015940 |
| SMART | SM00165 | uba_6 | 180 | 220 | 5.8E-6 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 409 | 2.7E-112 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 20.30477 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 181 | 221 | 12.860156 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 363 | 404 | 13.968622 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 392 | 407 | 4.6E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 377 | 391 | 4.6E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 311 | 333 | 4.6E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 360 | 376 | 4.6E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 124 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 258 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_022733101.1 | ubiquitin receptor RAD23d-like isoform X1 [Durio zibethinus] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A6P5XZC0 | Ubiquitin receptor RAD23 OS=Durio zibethinus OX=66656 GN=LOC111287119 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology