Basic Information
Locus ID:
gene_3999
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 13008045 | 13038074 | + | gene_3999 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 36,822.77 Da | 38.78 | 91.62 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 160 | 290 | 1.06596E-64 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 173 | 281 | 2.4E-32 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 59 | 94 | 2.4E-5 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 95 | 312 | 4.9E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 11 | 152 | 1.75E-22 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 93 | 155 | 1.0E-13 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 8 | 92 | 4.9E-16 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 156 | 320 | 4.7E-61 | IPR027417 |
| SMART | SM00490 | helicmild6 | 200 | 281 | 1.2E-35 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 34 | 62 | 10.824841 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 96 | 148 | 10.653694 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 159 | 320 | 27.10527 | IPR001650 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19760.1 | eukaryotic initiation factor 4A-III. Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles. | 0 |
| RefSeq | XP_024993567.1 | eukaryotic initiation factor 4A-3 [Cynara cardunculus var. scolymus] | 0 |
| P41380 | Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J5AD45 | DEAD-box ATP-dependent RNA helicase 2 OS=Nyssa sinensis OX=561372 GN=F0562_033577 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology