Basic Information
Locus ID:
gene_394
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Anaphase-promoting complex subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 7296727 | 7318432 | - | gene_394 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.12 | 87,676.21 Da | 48.99 | 96.82 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 29 | 114 | 1.3E-28 | IPR024977 |
| Pfam | PF12896 | Anaphase-promoting complex, cyclosome, subunit 4 | 267 | 469 | 3.8E-57 | IPR024790 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 19 | 242 | 4.76E-19 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 251 | 1.5E-15 | IPR015943 |
| SMART | SM00320 | WD40_4 | 52 | 90 | 6.3E-4 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21530.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021740448.1 | anaphase-promoting complex subunit 4-like isoform X1 [Chenopodium quinoa] | 0 |
| O65418 | Anaphase-promoting complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=APC4 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9R3I4 | Anaphase-promoting complex subunit 4 (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_117580 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg11010 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_394 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah017877, Ah017884 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg10281, Sbi_jg10282, Sbi_jg47990 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg22205 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023938 |
| Amaranthaceae | Suaeda glauca | 12 | Sgl31624, Sgl32487, Sgl32495, Sgl37762, Sgl43634, Sgl44201 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011015, gene:ENSEOMG00000032991 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0004040, CQ.Regalona.r1.8BG0004200 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30092630 |
| Apiaceae | Apium graveolens | 1 | Ag7G00680 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G000310 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718156 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2514.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G23287, Ftri11G27623 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G21530.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024471m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g19640.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g070680.2N, BniB05g015590.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq04G1463, Ceq04G1464, Ceq04G1465 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G1628, Cgl04G1629 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g06920 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0219s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g11100 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.1030 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005780 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24949, Lb4G24958 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3716, BH07.3538, CH07.3610 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0148330, gene-QOZ80_2BG0203700 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0621980.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_026151 |
| Poaceae | Oryza coarctata | 2 | Oco03G023690, Oco04G024250 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g54490.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G299700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0202983 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G018160, Chr13G002390 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G613400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG051800, gene_TRIDC6BG060500 |
| Poaceae | Triticum aestivum | 3 | TraesCS6B02G377000.1, TraesCS6D02G327000.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb125490_P001, Zm00001eb192820_P002 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-8492 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14580 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1683, evm.TU.LG14.919 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g14210 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.168 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-29553, nbisL1-mrna-29882 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2912 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20862 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.107 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015813 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5990 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16937 |
| Salicaceae | Populus euphratica | 1 | populus_peu10151 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621550 |
| Solanaceae | Solanum chilense | 1 | SOLCI000111100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011184 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.22159_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2256 |
| Zosteraceae | Zostera marina | 1 | Zosma03g19410.v3.1 |