Basic Information
Locus ID:
gene_3937
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 2842050 | 2845093 | + | gene_3937 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 48,949.22 Da | 45.06 | 70.79 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 146 | 415 | 1.63651E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 292 | 330 | 0.015 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 162 | 220 | 2.1E-7 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 245 | 279 | 8.0E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 380 | 415 | 0.002 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 135 | 415 | 7.33E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 71 | 418 | 8.6E-126 | IPR015943 |
| SMART | SM00320 | WD40_4 | 376 | 415 | 7.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 198 | 236 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 240 | 279 | 1.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 333 | 373 | 310.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 156 | 195 | 1.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 288 | 330 | 2.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 110 | 151 | 380.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 247 | 279 | 14.017362 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 163 | 204 | 13.382416 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 163 | 195 | 9.99469 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 383 | 416 | 10.706503 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 383 | 416 | 12.881143 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 247 | 279 | 11.602863 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 402 | 416 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_010671158.1 | cell division cycle 20.2, cofactor of APC complex [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L226 | ANAPC4_WD40 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology