Basic Information
Locus ID:
gene_3936
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 2801931 | 2819766 | + | gene_3936 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.47 | 95,860.78 Da | 41.61 | 73.42 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 380 | 436 | 5.30083E-28 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 444 | 804 | 2.1E-37 | IPR001525 |
| Pfam | PF01426 | BAH domain | 116 | 226 | 2.2E-11 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 397 | 437 | 1.2E-8 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 378 | 439 | 1.19E-12 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 269 | 804 | 5.98E-77 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 216 | 603 | 7.8E-162 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 604 | 770 | 5.6E-59 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 54 | 215 | 1.7E-46 | IPR043151 |
| SMART | SM00439 | BAH_4 | 113 | 230 | 2.5E-20 | IPR001025 |
| SMART | SM00298 | chromo_7 | 380 | 439 | 4.5E-11 | IPR000953 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 449 | 801 | 2.2E-30 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 381 | 446 | 11.942101 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 271 | 811 | 44.701 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 113 | 230 | 18.994158 | IPR001025 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 451 | 463 | - | IPR018117 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 404 | 424 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 272 | 288 | 2.6E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 494 | 508 | 2.6E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 540 | 553 | 2.6E-10 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 91 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_010662139.1 | PREDICTED: DNA (cytosine-5)-methyltransferase CMT2 isoform X2 [Vitis vinifera] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | A0A7C9DN37 | Cytosine-specific methyltransferase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology