Basic Information
Locus ID:
gene_3921
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 1496210 | 1496945 | + | gene_3921 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.28 | 17,980.97 Da | 30.64 | 89.33 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 92 | 154 | 6.91953E-17 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 90 | 153 | 1.7E-15 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 15 | 77 | 2.0E-15 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 7 | 154 | 4.28E-45 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 84 | 159 | 3.2E-22 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 4 | 79 | 1.2E-22 | - |
| SMART | SM00054 | efh_1 | 52 | 80 | 0.0061 | IPR002048 |
| SMART | SM00054 | efh_1 | 16 | 44 | 1.1E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 92 | 120 | 0.017 | IPR002048 |
| SMART | SM00054 | efh_1 | 128 | 156 | 2.1E-5 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 88 | 123 | 14.764463 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 48 | 83 | 11.947029 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 12 | 47 | 15.071314 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 124 | 159 | 13.034948 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 25 | 37 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 101 | 113 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 137 | 149 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 61 | 73 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03000.1 | EF hand calcium-binding protein family. Calmodulin like protein localized in the plant vacuolar compartment with a function of binding and modifying the activity of a tonoplast transporter (AtNHX1) from within the vacuole in a Ca+2- and pH-dependent manner | 0 |
| RefSeq | XP_012070221.1 | probable calcium-binding protein CML18 [Jatropha curcas] | 0 |
| Q9M8U1 | Probable calcium-binding protein CML18 OS=Arabidopsis thaliana OX=3702 GN=CML18 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067L4T3 | Calcium-binding protein CML18 OS=Jatropha curcas OX=180498 GN=JCGZ_02535 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology