Basic Information
Locus ID:
gene_3919
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 7645508 | 7648358 | - | gene_3919 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.17 | 46,284.99 Da | 39.97 | 88.84 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 12 | 58 | 1.83E-9 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 351 | 373 | 3.4E-5 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 48 | 4.4E-6 | - |
| SMART | SM00256 | fbox_2 | 352 | 392 | 6.4 | IPR001810 |
| SMART | SM00256 | fbox_2 | 12 | 52 | 0.91 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 125 | 273 | 4.8E-15 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30920.1 | F-box family protein. | 0 |
| RefSeq | XP_016669959.2 | F-box protein CPR1-like [Gossypium hirsutum] | 0 |
| P0C2G2 | Putative F-box protein At1g30920 OS=Arabidopsis thaliana OX=3702 GN=At1g30920 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8J5Y0N3 | F-box domain-containing protein OS=Gossypium anomalum OX=47600 GN=CXB51_024871 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 18 | gene_18345, gene_18346, gene_18375, gene_18411, gene_18412 ... |