Basic Information
Locus ID:
gene_3918
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 7633370 | 7638151 | - | gene_3918 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 92,187.82 Da | 48.92 | 92.06 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 405 | 438 | 8.9E-5 | IPR001810 |
| Pfam | PF00646 | F-box domain | 7 | 40 | 0.0015 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 56 | 2.62E-8 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 403 | 475 | 4.71E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 6 | 44 | 3.7E-5 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 390 | 475 | 1.2E-7 | - |
| SMART | SM00256 | fbox_2 | 406 | 446 | 4.2E-4 | IPR001810 |
| SMART | SM00256 | fbox_2 | 8 | 48 | 2.5E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 131 | 350 | 4.0E-18 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 527 | 707 | 4.7E-16 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 400 | 447 | 9.047065 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 2 | 48 | 9.047065 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06240.1 | F-box family protein. | 0 |
| RefSeq | XP_049368615.1 | F-box protein CPR1-like [Solanum verrucosum] | 0 |
| Q8GXC7 | F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana OX=3702 GN=At3g06240 PE=2 SV=1 | 0 | |
| TrEMBL | A0A314KTM4 | F-box protein OS=Nicotiana attenuata OX=49451 GN=A4A49_26981 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 18 | gene_18345, gene_18346, gene_18375, gene_18411, gene_18412 ... |