Basic Information
Locus ID:
gene_3916
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 7581065 | 7582436 | - | gene_3916 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 40,373.33 Da | 41.59 | 84.05 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 27 | 67 | 4.4E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 24 | 86 | 1.83E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 16 | 66 | 1.7E-6 | - |
| SMART | SM00256 | fbox_2 | 24 | 64 | 3.5E-7 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 128 | 230 | 2.1E-11 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 18 | 65 | 10.080346 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12170.1 | F-box family protein. | 0 |
| RefSeq | XP_022888940.1 | F-box/kelch-repeat protein At3g23880-like [Olea europaea var. sylvestris] | 0 |
| Q9FWW7 | Putative F-box/kelch-repeat protein At1g12170 OS=Arabidopsis thaliana OX=3702 GN=At1g12170 PE=4 SV=2 | 0 | |
| TrEMBL | A0A7C9AYU5 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 15 | gene_12873, gene_12874, gene_18285, gene_18342, gene_18344 ... |