Basic Information
Locus ID:
gene_390
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 7125084 | 7143176 | - | gene_390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 52,476.86 Da | 51.42 | 103.56 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 9 | 50 | 1.7E-8 | IPR001810 |
| Pfam | PF08387 | FBD | 376 | 415 | 2.1E-8 | IPR006566 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 49 | 3.66E-10 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 106 | 361 | 2.59E-12 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 54 | 414 | 2.6E-9 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 52 | 4.3E-8 | - |
| SMART | SM00256 | fbox_2 | 13 | 53 | 1.1E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 7 | 53 | 9.470975 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26922.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_010696608.1 | F-box/LRR-repeat protein At3g26922 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LJF8 | F-box/LRR-repeat protein At3g26922 OS=Arabidopsis thaliana OX=3702 GN=At3g26922 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0J8E110 | F-box domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_8g199730 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_390 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah017899 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl45777, Sgl45778, Sgl45816, Sgl45818, Sgl50520, Sgl50521 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000009555, gene:ENSEOMG00000033591 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0004120, CQ.Regalona.r1.8BG0004410 |
| Arecaceae | Cocos nucifera | 1 | scaffold004783G000060 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696164 |
| Poaceae | Echinochloa crus-galli | 8 | AH02.859, AH02.861, AH02.959, AH03.1007, BH02.1162 ... |
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_1AG0004910, gene-QOZ80_1AG0004930 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_013133, gene-QYE76_052331, gene-QYE76_052332 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G107400, gene-BS78_03G116000 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr05G001150, Chr05G004060, Chr05G004070, Chr08G019910 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel3E01G309500, Tel3E01G309800, Tel4E01G363800 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS3B02G207000.1, TraesCS3D02G182700.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb127920_P001, Zm00001eb152580_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-32453 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7395 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG01.1658 |