Basic Information
Locus ID:
gene_3876
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 6653294 | 6654743 | - | gene_3876 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 35,125.42 Da | 50.96 | 91.99 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 21 | 53 | 1.3E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 20 | 72 | 1.96E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 19 | 73 | 4.0E-10 | - |
| SMART | SM00256 | fbox_2 | 25 | 64 | 1.5E-6 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 19 | 65 | 9.550458 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52320.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_048434712.1 | F-box/kelch-repeat protein At3g06240-like [Pyrus x bretschneideri] | 0 |
| TrEMBL | A0A5N6QXL2 | F-box domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_007560 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 15 | gene_12873, gene_12874, gene_18285, gene_18342, gene_18344 ... |