Basic Information
Locus ID:
gene_3855
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 6335689 | 6343452 | - | gene_3855 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 151,246.92 Da | 39.92 | 100.41 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 1118 | 1386 | 2.75704E-85 | - |
| Pfam | PF00069 | Protein kinase domain | 1115 | 1381 | 3.5E-43 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 867 | 905 | 1.6E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 652 | 692 | 1.7E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 504 | 549 | 8.9E-9 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 730 | 752 | 0.57 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 502 | 811 | 6.46E-55 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1092 | 1383 | 2.56E-74 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 831 | 925 | 3.23E-13 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 702 | 828 | 2.0E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 829 | 957 | 2.1E-15 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1073 | 1187 | 2.2E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1188 | 1387 | 1.2E-57 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 502 | 701 | 2.2E-40 | IPR032675 |
| SMART | SM00220 | serkin_6 | 1112 | 1389 | 4.7E-35 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 631 | 654 | 170.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 679 | 703 | 69.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 728 | 752 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 655 | 678 | 88.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 776 | 800 | 15.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 868 | 891 | 400.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1112 | 1390 | 38.845192 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1232 | 1244 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1118 | 1140 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 331 | 350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1009 | 1036 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02130.2 | - | 0 |
| RefSeq | XP_021756718.1 | LRR receptor-like serine/threonine-protein kinase RPK2 [Chenopodium quinoa] | 0 |
| Q9S7I6 | LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana OX=3702 GN=RPK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KVN7 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology