Basic Information
Locus ID:
gene_3850
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box protein CPR30-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 6248338 | 6250587 | - | gene_3850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.90 | 55,545.92 Da | 46.27 | 78.14 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 6 | 40 | 9.2E-7 | IPR001810 |
| Pfam | PF13456 | Reverse transcriptase-like | 346 | 439 | 1.1E-5 | IPR002156 |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 259 | 1.23E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 40 | 3.6E-7 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 340 | 472 | 2.4E-5 | IPR036397 |
| SMART | SM00256 | fbox_2 | 4 | 44 | 3.2E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 121 | 310 | 1.2E-16 | IPR017451 |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12560.1 | F-box and associated interaction domains-containing protein. Encodes CPR30 (Constitutive Expresser of PR Genes 30), a F-Box protein that functions as a negative regulator of defense response. | 0 |
| RefSeq | XP_028774124.1 | F-box/kelch-repeat protein At3g06240-like [Prosopis alba] | 0 |
| Q9SU30 | F-box protein CPR1 OS=Arabidopsis thaliana OX=3702 GN=CPR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C9AYU5 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 15 | gene_12873, gene_12874, gene_18285, gene_18342, gene_18344 ... |