Basic Information
Locus ID:
gene_3823
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 5945995 | 5949191 | - | gene_3823 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 82,900.50 Da | 43.05 | 85.27 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 9 | 45 | 3.7E-6 | IPR001810 |
| Pfam | PF07734 | F-box associated | 223 | 329 | 2.0E-5 | IPR006527 |
| Pfam | PF12937 | F-box-like | 352 | 388 | 1.3E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 346 | 415 | 4.19E-11 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 76 | 1.2E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 46 | 2.4E-6 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 348 | 392 | 5.3E-6 | - |
| SMART | SM00256 | fbox_2 | 9 | 49 | 3.4E-8 | IPR001810 |
| SMART | SM00256 | fbox_2 | 354 | 394 | 3.7E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 114 | 336 | 5.3E-20 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07870.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_042477644.1 | uncharacterized protein LOC122058999 [Macadamia integrifolia] | 0 |
| Q9SFC7 | F-box protein At3g07870 OS=Arabidopsis thaliana OX=3702 GN=At3g07870 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7N2R374 | F-box domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 6 | gene_18276, gene_3818, gene_3820, gene_3821, gene_3822 ... |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g038860 |