halophFGD

Basic Information

Locus ID: gene_3821

Species & Taxonomic ID: Mesembryanthemum crystallinum & 3544

Genome Assembly: Koichi Toyokura Assembly

Description: f-box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Super-Scaffold_10_Chr_8	5934359	5935483	-	gene_3821

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.71	38,582.99 Da	52.23	81.84	-0.24

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF81383	F-box domain	3	60	6.02E-9	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	2	56	6.3E-6	-
SMART	SM00256	fbox_2	5	44	9.5E-6	IPR001810
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	101	310	9.1E-14	IPR017451

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G57590.2	-
RefSeq	XP_002298418.2	F-box protein CPR1 [Populus trichocarpa]
TrEMBL	A0A067FLD4	F-box domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g016751mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	6	gene_18276, gene_3818, gene_3820, gene_3821, gene_3822 ... gene_3823
Amaranthaceae	Beta vulgaris	1	BVRB_2g038860