Basic Information
Locus ID:
gene_3820
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 5919864 | 5924314 | - | gene_3820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.28 | 75,160.06 Da | 40.87 | 80.54 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 6 | 42 | 6.0E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 83 | 1.44E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 41 | 1.0E-6 | - |
| SMART | SM00256 | fbox_2 | 5 | 45 | 4.1E-10 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 104 | 353 | 3.9E-20 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 429 | 624 | 1.6E-15 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 39 | 9.073559 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G57590.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_019232636.1 | PREDICTED: F-box protein At3g07870-like isoform X2 [Nicotiana attenuata] | 0 |
| Q9SVX4 | F-box protein At3g57590 OS=Arabidopsis thaliana OX=3702 GN=At3g57590 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1J6KET4 | F-box protein OS=Nicotiana attenuata OX=49451 GN=A4A49_21039 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 6 | gene_18276, gene_3818, gene_3820, gene_3821, gene_3822 ... |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g038860 |