Basic Information
Locus ID:
gene_3819
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Di-glucose binding within endoplasmic reticulum
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 5856434 | 5863838 | - | gene_3819 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.35 | 55,980.22 Da | 48.86 | 81.76 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 218 | 498 | 2.13822E-87 | - |
| Pfam | PF00069 | Protein kinase domain | 213 | 495 | 2.7E-45 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 196 | 498 | 1.31E-69 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 170 | 297 | 1.1E-21 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 298 | 505 | 4.8E-59 | - |
| SMART | SM00220 | serkin_6 | 212 | 502 | 8.1E-32 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 212 | 503 | 36.922966 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 218 | 240 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 343 | 355 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G48010.1 | receptor-like kinase in in flowers 3. receptor-like serine/threonine kinase (RKF3) | 0 |
| RefSeq | XP_010673783.1 | probable LRR receptor-like serine/threonine-protein kinase RKF3 [Beta vulgaris subsp. vulgaris] | 0 |
| P93050 | Probable LRR receptor-like serine/threonine-protein kinase RKF3 OS=Arabidopsis thaliana OX=3702 GN=RKF3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803L3X2 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10943, gene_3819 |