Basic Information
Locus ID:
gene_3818
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box Kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 5849474 | 5851282 | - | gene_3818 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.32 | 53,048.42 Da | 42.09 | 85.39 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 6 | 41 | 1.7E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 52 | 1.57E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 41 | 5.5E-6 | - |
| SMART | SM00256 | fbox_2 | 5 | 45 | 7.3E-10 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 109 | 372 | 3.7E-22 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 39 | 9.656436 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23880.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_024984658.1 | F-box/kelch-repeat protein At3g23880-like isoform X2 [Cynara cardunculus var. scolymus] | 0 |
| Q9LIR8 | F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1 | 0 | |
| TrEMBL | A0A118JZZ4 | F-box associated domain, type 1 OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_021159 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 6 | gene_18276, gene_3818, gene_3820, gene_3821, gene_3822 ... |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g038860 |