Basic Information
Locus ID:
gene_3800
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 49902985 | 49918473 | - | gene_3800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 33,970.60 Da | 54.52 | 61.62 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 236 | 293 | 1.3E-21 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 188 | 231 | 3.0E-8 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 53 | 134 | 1.0E-18 | IPR008913 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 50 | 124 | 3.4E-16 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 125 | 182 | 2.48E-19 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 188 | 237 | 5.46E-10 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 259 | 297 | 2.1E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 183 | 234 | 2.2E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 189 | 231 | 3.1E-8 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 46 | 122 | 24.89053 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 189 | 232 | 12.164712 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 124 | 188 | 34.652538 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25560.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_021862719.1 | probable E3 ubiquitin-protein ligase RZFP34 isoform X1 [Spinacia oleracea] | 0 |
| Q5JL96 | Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=39947 GN=RZFP34 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9A892 | E3 ubiquitin-protein ligase MIEL1-like OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology