Basic Information
Locus ID:
gene_371
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 6739371 | 6754695 | - | gene_371 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 134,530.55 Da | 48.84 | 77.25 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1068 | 1175 | 1.49247E-52 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 485 | 794 | 3.30455E-89 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 910 | 946 | 7.0E-7 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1064 | 1165 | 1.6E-15 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 505 | 871 | 4.5E-68 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 469 | 794 | 3.71E-45 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 802 | 1222 | 4.76E-56 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 907 | 967 | 4.16E-10 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 460 | 644 | 3.9E-21 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 960 | 1223 | 7.2E-56 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 903 | 959 | 1.3E-9 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 645 | 807 | 4.8E-30 | IPR038718 |
| SMART | SM00184 | ring_2 | 910 | 948 | 0.0035 | IPR001841 |
| SMART | SM00490 | helicmild6 | 1082 | 1165 | 5.9E-18 | IPR001650 |
| SMART | SM00487 | ultradead3 | 481 | 775 | 5.3E-29 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 500 | 756 | 13.206377 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 910 | 949 | 10.541882 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1059 | 1213 | 15.129812 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 925 | 934 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 646 | 687 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 531 | 579 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 646 | 670 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021740504.1 | helicase-like transcription factor CHR28 [Chenopodium quinoa] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QNB3 | DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_160060 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology