Basic Information
Locus ID:
gene_3657
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 26847163 | 26858336 | - | gene_3657 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 100,293.72 Da | 50.80 | 82.48 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 702 | 885 | 5.97141E-64 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 290 | 884 | 1.6E-82 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 288 | 886 | 1.96E-109 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 656 | 890 | 2.1E-57 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 279 | 517 | 6.5E-67 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 290 | 887 | 56.969334 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 830 | 847 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 291 | 306 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_010685465.1 | ubiquitin carboxyl-terminal hydrolase 8 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C9E6S4 | Ubiquitin carboxyl-terminal hydrolase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology