Basic Information
Locus ID:
gene_3645
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Ubiquitin-like-specific protease 1D
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 3012568 | 3027227 | - | gene_3645 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.55 | 73,548.89 Da | 64.80 | 70.76 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02902 | Ulp1 protease family, C-terminal catalytic domain | 395 | 597 | 7.5E-44 | IPR003653 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 368 | 610 | 6.67E-46 | IPR038765 |
| Gene3D | G3DSA:1.10.418.20 | - | 371 | 609 | 9.0E-75 | - |
| Gene3D | G3DSA:3.30.310.130 | - | 420 | 548 | 9.0E-75 | - |
| ProSiteProfiles | PS50600 | Ubiquitin-like protease family profile. | 380 | 571 | 25.017637 | IPR003653 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 283 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 239 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 218 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 188 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60220.1 | UB-like protease 1D. Encodes a deSUMOylating enzyme. In vitro it has both peptidase activity and isopeptidase activity: it can cleave C-terminal residues from SUMO to activate it for attachment to a target protein and it can also act on the isopeptide bond between SUMO and another protein. sGFP:OTS1 protein accumulates in the nucleus. Double mutant analysis with ULP1C/OTS2 indicates that these genes are involved in salt stress responses and flowering time regulation. Over-expression of 35S:OTS1 increases salt tolerance and reduces the level of SUMO-conjugated proteins. OTS1 transcript levels do not appear to change in response to salt, but, salt stress reduces the level of OTS1 protein in a proteasome-dependent manner. | 0 |
| RefSeq | XP_010682566.2 | ubiquitin-like-specific protease 1D isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q2PS26 | Ubiquitin-like-specific protease 1D OS=Arabidopsis thaliana OX=3702 GN=ULP1D PE=1 SV=1 | 0 | |
| TrEMBL | A0A2I7ZAP8 | UB-like protease 1D OS=Sesuvium portulacastrum OX=221166 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg34636, jg9460 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_3645, gene_4190 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah013550 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g148950 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42939, Sbi_jg45550 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11397 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002402 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl35364, Sgl40718 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000047, gene:ENSEOMG00000014343 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0005460, CQ.Regalona.r1.6BG0005710 |
| Apiaceae | Apium graveolens | 2 | Ag1G01334, Ag6G00333 |
| Arecaceae | Cocos nucifera | 3 | COCNU_05G009910, COCNU_13G000110, scaffold005896G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103701973, gene-LOC103705845, gene-LOC103715955 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2791.V1.1, AsparagusV1_05.1147.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri13G29943, Ftri18G03634, Ftri18G25601, Ftri8G28674 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G10570.1, AT1G60220.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007260m.g.v1.0, Thhalv10023376m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g09220.v2.2, Sp2g04460.v2.2, SpUn0106_0010.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g019350.2N, BniB04g020080.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0809 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0863 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g10350, gene.Cymno09g07800 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0112s00007.v1.0, Dusal.0253s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate02g08440, gene.Thate02g22320, gene.Thate06g12750 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5598 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1035 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00022408, Pov_00034371 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00896 |
| Poaceae | Echinochloa crus-galli | 12 | AH02.3107, AH05.4000, AH06.1458, BH02.3180, BH05.4097 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0032450, gene-QOZ80_6AG0520320 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0287460.1, HORVU.MOREX.r3.5HG0431790.1 ... |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_000321, gene-QYE76_000791, gene-QYE76_000833 ... |
| Poaceae | Oryza coarctata | 4 | Oco02G020150, Oco11G008780, Oco12G008800, Oco24G009860 |
| Poaceae | Oryza sativa | 3 | LOC_Os01g53630.1, LOC_Os06g29310.1, LOC_Os12g41380.1 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_03G269500, gene-BS78_08G139400 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0403920, Pt_Chr0403959, Pt_Chr0602549 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr02G010210, Chr04G018740, Chr05G023180, Chr06G019590 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G459200, Tel5E01G117700, Tel7E01G416700 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC3AG041300, gene_TRIDC3BG046600 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS3A02G278200.1, TraesCS3B02G312400.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb031350_P001, Zm00001eb153850_P005 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-26405, nbis-gene-28854 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g11087, Zma_g26100, Zma_g29652 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.396, evm.TU.LG12.1311, evm.TU.LG13.225 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc02g26010, gene.Posoc03g19030, gene.Posoc04g05100 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.741 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26916 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10217 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15653 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.399 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002494 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11264 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17770 |
| Salicaceae | Populus euphratica | 1 | populus_peu37051 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132615930, gene-LOC132641351 |
| Solanaceae | Solanum chilense | 1 | SOLCI002489200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107018287, gene-LOC107018673 |
| Tamaricaceae | Reaumuria soongarica | 2 | MSTRG.165_chr01_-, STRG.9183_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0942 |
| Zosteraceae | Zostera marina | 2 | Zosma06g00390.v3.1, Zosma06g07230.v3.1 |