Basic Information
Locus ID:
gene_3639
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 24840826 | 24846829 | - | gene_3639 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 115,146.82 Da | 45.63 | 104.31 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 255 | 302 | 2.94073E-20 | - |
| Pfam | PF05804 | Kinesin-associated protein (KAP) | 424 | 607 | 1.1E-4 | - |
| Pfam | PF04564 | U-box domain | 254 | 324 | 2.9E-15 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 636 | 1020 | 1.38E-25 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 430 | 736 | 3.99E-23 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 331 | 476 | 6.62E-8 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 244 | 325 | 3.96E-20 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 330 | 849 | 2.5E-40 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 252 | 326 | 2.1E-21 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 875 | 1030 | 6.3E-15 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 254 | 322 | 8.7E-20 | IPR003613 |
| SMART | SM00185 | arm_5 | 532 | 569 | 15.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 570 | 612 | 38.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 892 | 933 | 0.0011 | IPR000225 |
| SMART | SM00185 | arm_5 | 807 | 847 | 170.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 983 | 1022 | 320.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 250 | 329 | 19.488844 | IPR003613 |
| ProSiteProfiles | PS50077 | HEAT repeat profile. | 905 | 942 | 9.308901 | IPR021133 |
| Coils | Coil | Coil | 121 | 148 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20780.1 | senescence-associated E3 ubiquitin ligase 1. Encodes a protein containing a U-box and an ARM domain. | 0 |
| RefSeq | XP_021720659.1 | U-box domain-containing protein 44-like [Chenopodium quinoa] | 0 |
| Q9LM76 | U-box domain-containing protein 44 OS=Arabidopsis thaliana OX=3702 GN=PUB44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KRH3 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6897 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027823 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g171960 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1554, Sbi_jg34993 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg3191, Seu_jg3192 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003380 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72805, Sgl76344 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000035718, gene:ENSEOMG00000037562 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0004470, CQ.Regalona.r1.9BG0001160 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30061300, pistato.v30065060 |
| Apiaceae | Apium graveolens | 1 | Ag2G00822 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G003250, scaffold075410G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718312 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.264.V1.1, AsparagusV1_Unassigned.156.V1.1 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1866 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1922 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.1080 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G37730, Lb3G18363, Lb3G19221 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.1057, evm.TU.LG24.1060 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g36720 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3639 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1216 |