Basic Information
Locus ID:
gene_3637
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
AMSH-like ubiquitin thioesterase 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 2886924 | 2894534 | - | gene_3637 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.70 | 28,727.34 Da | 54.24 | 72.84 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 59 | 223 | 5.29853E-89 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 60 | 165 | 1.1E-13 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 61 | 192 | 1.7E-20 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 41 | 233 | 1.0E-62 | - |
| SMART | SM00232 | pad1_6 | 61 | 189 | 1.4E-11 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 62 | 190 | 25.174898 | IPR037518 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10600.1 | associated molecule with the SH3 domain of STAM 2. | 0 |
| RefSeq | XP_021842922.1 | AMSH-like ubiquitin thioesterase 2 isoform X2 [Spinacia oleracea] | 0 |
| Q6NKP9 | AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana OX=3702 GN=AMSH2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RVL5 | MPN domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_023760 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology