Basic Information
Locus ID:
gene_3629
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Short Name:
DRM2
Description:
DNA (cytosine-5)-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 2754807 | 2760358 | - | gene_3629 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 66,739.69 Da | 32.55 | 82.43 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 472 | 588 | 6.6E-12 | IPR001525 |
| SUPERFAMILY | SSF46934 | UBA-like | 50 | 102 | 1.92E-5 | IPR009060 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 268 | 465 | 1.66E-23 | IPR029063 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 470 | 590 | 4.44E-20 | IPR029063 |
| Gene3D | G3DSA:1.10.8.10 | - | 36 | 99 | 1.9E-8 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 412 | 452 | 2.1E-5 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 471 | 594 | 2.8E-27 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 269 | 367 | 9.2E-7 | - |
| ProSiteProfiles | PS51680 | SAM-dependent methyltransferase DRM-type domain profile. | 267 | 596 | 127.023315 | IPR030380 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 472 | 596 | 21.389986 | IPR001525 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 52 | 93 | 9.582951 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 144 | 187 | 9.558853 | IPR015940 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 549 | 561 | - | IPR018117 |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15380.1 | domains rearranged methylase 1. Encodes methyltransferase involved in the de novo DNA methylation and maintenance of asymmetric methylation of DNA sequences. | 0 |
| RefSeq | XP_021727470.1 | DNA (cytosine-5)-methyltransferase DRM2-like [Chenopodium quinoa] | 0 |
| Q9LXE5 | DNA (cytosine-5)-methyltransferase DRM1 OS=Arabidopsis thaliana OX=3702 GN=DRM1 PE=3 SV=2 | 0 | |
| TrEMBL | A0A803LJC0 | DNA (Cytosine-5)-methyltransferase DRM2 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology