Basic Information
Locus ID:
gene_3600
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 21846094 | 21867584 | - | gene_3600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 141,392.55 Da | 51.40 | 75.07 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 663 | 819 | 3.18525E-28 | - |
| CDD | cd12108 | Hr-like | 317 | 445 | 7.46432E-19 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1129 | 1172 | 3.91573E-16 | - |
| CDD | cd12108 | Hr-like | 56 | 183 | 1.37494E-31 | - |
| Pfam | PF05495 | CHY zinc finger | 1002 | 1076 | 2.0E-19 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 659 | 819 | 2.1E-6 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 58 | 185 | 6.7E-12 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 315 | 447 | 2.3E-7 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1177 | 1234 | 5.3E-24 | IPR039512 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1067 | 1122 | 2.48E-15 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 995 | 1058 | 6.15E-18 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1128 | 1175 | 1.18E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1126 | 1174 | 1.7E-8 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 655 | 882 | 8.4E-25 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1201 | 1241 | 6.4E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 313 | 463 | 8.2E-19 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 52 | 203 | 1.5E-33 | - |
| SMART | SM00184 | ring_2 | 1130 | 1171 | 1.5E-5 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1066 | 1129 | 29.222317 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 995 | 1064 | 25.28661 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1130 | 1172 | 11.146755 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_010681649.2 | zinc finger protein BRUTUS isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8YHY9 | Zinc finger protein BRUTUS OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology