Basic Information
Locus ID:
gene_3543
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 1503328 | 1510165 | - | gene_3543 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.48 | 157,246.78 Da | 38.41 | 106.91 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 217 | 506 | 5.30908E-88 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 835 | 1125 | 2.61729E-80 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1148 | 1369 | 7.65101E-125 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 531 | 736 | 6.54868E-80 | - |
| Pfam | PF00005 | ABC transporter | 558 | 688 | 2.7E-15 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 840 | 1079 | 2.1E-27 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 215 | 485 | 1.3E-23 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1167 | 1316 | 6.7E-30 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 836 | 1130 | 3.27E-47 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1143 | 1377 | 4.74E-65 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 557 | 750 | 1.85E-47 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 210 | 511 | 6.54E-29 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 798 | 1131 | 2.7E-51 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1133 | 1387 | 4.5E-79 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 511 | 773 | 9.5E-65 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 189 | 510 | 1.7E-41 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1176 | 1368 | 1.2E-9 | IPR003593 |
| SMART | SM00382 | AAA_5 | 562 | 736 | 5.8E-11 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 216 | 498 | 30.12388 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1150 | 1385 | 17.013609 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 533 | 759 | 19.74802 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 837 | 1113 | 32.183098 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 661 | 675 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13100.1 | multidrug resistance-associated protein 7. member of MRP subfamily | 0 |
| RefSeq | XP_021746601.1 | putative ABC transporter C family member 15 [Chenopodium quinoa] | 0 |
| Q9LK62 | ABC transporter C family member 7 OS=Arabidopsis thaliana OX=3702 GN=ABCC7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R9G4 | ABC-type xenobiotic transporter OS=Spinacia oleracea OX=3562 GN=SOVF_091770 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology