Basic Information
Locus ID:
gene_354
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 6391753 | 6411590 | - | gene_354 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 113,448.19 Da | 57.70 | 80.75 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 248 | 382 | 2.42234E-19 | - |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 271 | 380 | 3.3E-6 | IPR004274 |
| SUPERFAMILY | SSF56784 | HAD-like | 150 | 408 | 2.14E-19 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 910 | 985 | 1.98E-12 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 779 | 842 | 2.81E-9 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 781 | 855 | 8.3E-6 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 906 | 989 | 1.1E-9 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 152 | 412 | 1.4E-25 | IPR023214 |
| SMART | SM00577 | forpap2 | 215 | 391 | 9.3E-13 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 912 | 980 | 4.9E-5 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 779 | 843 | 8.0E-5 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 156 | 404 | 15.809887 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 911 | 981 | 13.179195 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 778 | 844 | 11.164263 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 683 | 745 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 699 | 729 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 730 | 745 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 560 | 579 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 981 | 1030 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_010686545.1 | RNA polymerase II C-terminal domain phosphatase-like 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8ZZN2 | protein-serine/threonine phosphatase OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology