Basic Information
Locus ID:
gene_3445
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
nucleic acid binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 47545888 | 47552622 | - | gene_3445 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 29,215.20 Da | 32.69 | 70.65 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12269 | RRM_Vip1_like | 6 | 74 | 1.84314E-31 | IPR034360 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8 | 66 | 4.8E-7 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 3 | 81 | 2.85E-13 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 108 | 6.5E-11 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 5 | 74 | 1.0E-6 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 78 | 11.332346 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 278 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 278 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_021752053.1 | binding partner of ACD11 1-like [Chenopodium quinoa] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9DCM2 | RRM domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology