Basic Information
Locus ID:
gene_3444
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 47537515 | 47539162 | - | gene_3444 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.71 | 20,328.72 Da | 36.74 | 83.61 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 109 | 171 | 2.22875E-19 | IPR002048 |
| CDD | cd00051 | EFh | 33 | 95 | 3.05845E-13 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 32 | 94 | 9.0E-16 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 107 | 170 | 8.7E-17 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 27 | 171 | 2.35E-43 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 7 | 98 | 9.0E-22 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 101 | 176 | 3.2E-24 | - |
| SMART | SM00054 | efh_1 | 145 | 173 | 1.5E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 33 | 61 | 8.6E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 109 | 137 | 1.3E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 69 | 97 | 0.013 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 29 | 64 | 15.043417 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 141 | 176 | 13.620752 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 65 | 100 | 11.919133 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 105 | 140 | 15.685013 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 78 | 90 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 42 | 54 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 154 | 166 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 118 | 130 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03000.1 | EF hand calcium-binding protein family. Calmodulin like protein localized in the plant vacuolar compartment with a function of binding and modifying the activity of a tonoplast transporter (AtNHX1) from within the vacuole in a Ca+2- and pH-dependent manner | 0 |
| RefSeq | XP_010671108.1 | probable calcium-binding protein CML18 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9M8U1 | Probable calcium-binding protein CML18 OS=Arabidopsis thaliana OX=3702 GN=CML18 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KSR4 | Calcium-binding protein CML18 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology