Basic Information
Locus ID:
gene_3430
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 47273624 | 47283687 | - | gene_3430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.54 | 99,178.38 Da | 49.70 | 75.85 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 413 | 468 | 3.96753E-30 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 481 | 838 | 4.5E-36 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 431 | 467 | 2.5E-9 | IPR023780 |
| Pfam | PF01426 | BAH domain | 145 | 254 | 2.1E-9 | IPR001025 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 296 | 838 | 4.26E-79 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 410 | 468 | 1.12E-11 | IPR016197 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 637 | 804 | 1.3E-57 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 80 | 243 | 5.2E-47 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 244 | 636 | 4.1E-156 | - |
| SMART | SM00439 | BAH_4 | 141 | 258 | 3.6E-15 | IPR001025 |
| SMART | SM00298 | chromo_7 | 413 | 472 | 5.6E-6 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 295 | 845 | 48.709019 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 141 | 258 | 17.113434 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 414 | 467 | 11.326701 | IPR000953 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 484 | 496 | - | IPR018117 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 437 | 457 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 527 | 541 | 1.5E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 296 | 312 | 1.5E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 573 | 586 | 1.5E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 373 | 413 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_010671153.2 | DNA (cytosine-5)-methyltransferase CMT2 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | A0A7C9DN37 | Cytosine-specific methyltransferase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology