Basic Information
Locus ID:
gene_3428
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 47258360 | 47261096 | - | gene_3428 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.38 | 48,635.15 Da | 47.29 | 73.86 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 145 | 414 | 8.7489E-44 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 244 | 278 | 9.5E-7 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 161 | 219 | 9.6E-7 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 289 | 329 | 0.0031 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 379 | 414 | 7.9E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 96 | 414 | 2.98E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 71 | 417 | 9.8E-127 | IPR015943 |
| SMART | SM00320 | WD40_4 | 287 | 329 | 6.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 332 | 372 | 310.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 197 | 235 | 0.89 | IPR001680 |
| SMART | SM00320 | WD40_4 | 239 | 278 | 1.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 375 | 414 | 6.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 155 | 194 | 4.2E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 382 | 415 | 10.416506 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 246 | 278 | 11.523771 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 162 | 194 | 10.258324 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 246 | 278 | 13.917108 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 162 | 203 | 13.449252 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 382 | 415 | 12.513543 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 401 | 415 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_010671158.1 | cell division cycle 20.2, cofactor of APC complex [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L226 | ANAPC4_WD40 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology