Basic Information
Locus ID:
gene_3367
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 4716080 | 4723232 | - | gene_3367 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.29 | 163,456.13 Da | 38.73 | 110.01 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1207 | 1427 | 2.98725E-120 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 591 | 796 | 1.22139E-95 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 279 | 566 | 8.44932E-93 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 894 | 1184 | 2.48398E-79 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 279 | 545 | 2.5E-22 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1226 | 1374 | 9.3E-31 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 927 | 1136 | 2.5E-29 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 618 | 748 | 2.2E-13 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 270 | 571 | 2.75E-32 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 615 | 808 | 1.16E-46 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 896 | 1189 | 3.4E-48 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1198 | 1435 | 5.52E-67 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 609 | 846 | 4.2E-61 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 244 | 575 | 1.7E-47 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 861 | 1190 | 5.1E-54 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1192 | 1445 | 2.1E-81 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1235 | 1426 | 1.1E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 622 | 796 | 9.0E-13 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1209 | 1443 | 18.000664 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 593 | 819 | 19.814714 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 278 | 558 | 33.580624 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 896 | 1172 | 33.654781 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 721 | 735 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_010682873.2 | putative ABC transporter C family member 15 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B6Z5V5 | ABC-type xenobiotic transporter OS=Davidia involucrata OX=16924 GN=Din_007834 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology