Basic Information
Locus ID:
gene_3353
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
F-box only protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 4249354 | 4254271 | - | gene_3353 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 47,575.05 Da | 56.59 | 84.80 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 54 | 88 | 5.9E-8 | IPR001810 |
| SUPERFAMILY | SSF117281 | Kelch motif | 108 | 395 | 4.84E-20 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 47 | 97 | 6.41E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 55 | 93 | 2.3E-7 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 100 | 397 | 1.7E-13 | IPR015915 |
| SMART | SM00256 | fbox_2 | 58 | 98 | 2.1E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 52 | 97 | 9.153042 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 50 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27340.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_027769522.1 | F-box only protein 6 isoform X2 [Solanum pennellii] | 0 |
| Q9FZK1 | F-box only protein 6 OS=Arabidopsis thaliana OX=3702 GN=FBX6 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5C7HGE9 | F-box domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_017354 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg34507, jg9605 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3502 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah013932, Ah013944 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g150670 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42642, Sbi_jg45259 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26909 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002658 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl35474, Sgl40891 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003414, gene:ENSEOMG00000013195 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0002890, CQ.Regalona.r1.6BG0002780 |
| Apiaceae | Apium graveolens | 1 | Ag8G02301 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G009120, scaffold024819G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103715715, gene-LOC103719805 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.1469.V1.1, AsparagusV1_10.475.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri13G17458, Ftri8G16036, Ftri9G33008 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G27340.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007553m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g23570.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g032590.2N, BniB04g041720.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1012 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1059 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g12970 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.787 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019644 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34331 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0044850, gene-QOZ80_1BG0094860 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0311410.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_057458, gene-QYE76_057498 |
| Poaceae | Oryza coarctata | 2 | Oco01G028760, Oco02G029860 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g69940.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G385900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0503353, Pt_Chr0600560 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G002280, Chr03G023060, Chr05G032190, Chr08G019000 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G690100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG061570, gene_TRIDC3BG069280 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G435400.2, TraesCS3B02G470300.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb143020_P001, Zm00001eb364210_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-28305 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11834, Zma_g9287 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.1312, evm.TU.LG12.359, evm.TU.LG13.53 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g09090 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_15_RagTag.874, evm.TU.Scaffold_17_RagTag.109 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23248 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-11372, nbisL1-mrna-9344, nbisL1-mrna-9345 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14621, nbisL1-mrna-15532 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000001l.487, evm.TU.utg000013l.63 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00002381, Maker00006506 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11169, nbisL1-mrna-6970 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15999, nbisL1-mrna-17655 |
| Salicaceae | Populus euphratica | 2 | populus_peu03989, populus_peu34827 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641289 |
| Solanaceae | Solanum chilense | 1 | SOLCI006527500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007095 |
| Tamaricaceae | Reaumuria soongarica | 4 | STRG.5093_chr03_-, gene_11130, gene_11131, gene_3353 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0436 |